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Publications information icon

Different evolutionary trends form the twilight zone of the bacterial pan-genome

Peer-reviewed
Open access
DOI
10.1099/mgen.0.000670
Horesh, Gal; Taylor-Brown, Alyce; McGimpsey, Stephanie; Lassalle, Florent; Corander, Jukka; Heinz, E...
Microbial Genomics2021Publications information icon

Complete genome sequence of Eubacterium hallii strain L2-7

Peer-reviewed
Open access
DOI
10.1128/genomeA.01167-17
Shetty, S.A.; Ritari, J.; Paulin, L.; Smidt, H.; de Vos, Willem Meindert
Genome Announcements2017Publications information icon

Complete genome sequences of 30 bacterial species from a synthetic community

Peer-reviewed
Open access
DOI
10.1128/mra.00111-24
Hogle, Shane L; Tamminen, Manu; Hiltunen, Teppo
Microbiology resource announcements2024Publications information icon

Cerebrospinal Fluid Cathelicidin Correlates With the Bacterial Load and Outcomes in Childhood Bacterial Meningitis

Peer-reviewed
Open access
DOI
10.1097/INF.0000000000001744
Savonius, Okko; Helve, Otto; Roine, Irmeli; Andersson, Sture; Saukkoriipi, Annika; Mata, Antonio Gon...
Pediatric infectious disease journal2018Publications information icon

In situ generating CO gas for destroying bacterial biofilms

Peer-reviewed
Open access
DOI
10.1016/j.nantod.2024.102296
Zhuang, Pengzhen; Yang, Wu; Zhang, Yu; Chen, Yu; Ding, Tao; Chen, Yanyang; Wang, Fei; Rosenholm, Jes...
Nano today2024Publications information icon

Feature sequence-based genome mining uncovers the hidden diversity of bacterial siderophore pathways

Peer-reviewed
Open access
DOI
10.7554/eLife.96719
Gu, Shaohua; Shao, Yuanzhe; Rehm, Karoline; Bigler, Laurent; Zhang, Di; He, Ruolin; Xu, Ruichen; Sha...
eLife2024Publications information icon

HGGA:hierarchical guided genome assembler

Peer-reviewed
Open access
DOI
10.1186/s12859-022-04701-2
Walve, Riku; Salmela, Leena
BMC Bioinformatics2022Publications information icon

Scalable Reference Genome Assembly from Compressed Pan-Genome Index with Spark

Peer-reviewed
Open access
DOI
10.1007/978-3-030-59612-5_6
Maarala, Altti Ilari; Arasalo, Ossi; Valenzuela, Daniel; Heljanko, Keijo; Mäkinen, Veli
Lecture notes in computer science2020Publications information icon

Optical map guided genome assembly

Peer-reviewed
Open access
DOI
10.1186/s12859-020-03623-1
Leinonen, Miika; Salmela, Leena
BMC Bioinformatics2020Publications information icon

Measurement, modeling and optimization of bacterial bioprocesses

Peer-reviewed
Eerikäinen, Tero; Salonen, Kalle; Meskanen, Erkka; Moilanen, Ulla; Jokila, Juha; Jokinen, Tero; Gome...
BIOBIEN INNOVATIONS2006

Different evolutionary trends form the twilight zone of the bacterial pan-genome

Peer-reviewed
Open access
DOI
10.1099/mgen.0.000670
2021

Complete genome sequence of Eubacterium hallii strain L2-7

Peer-reviewed
Open access
DOI
10.1128/genomeA.01167-17
2017

Complete genome sequences of 30 bacterial species from a synthetic community

Peer-reviewed
Open access
DOI
10.1128/mra.00111-24
2024

Cerebrospinal Fluid Cathelicidin Correlates With the Bacterial Load and Outcomes in Childhood Bacterial Meningitis

Peer-reviewed
Open access
DOI
10.1097/INF.0000000000001744
2018

In situ generating CO gas for destroying bacterial biofilms

Peer-reviewed
Open access
DOI
10.1016/j.nantod.2024.102296
2024

Feature sequence-based genome mining uncovers the hidden diversity of bacterial siderophore pathways

Peer-reviewed
Open access
DOI
10.7554/eLife.96719
2024

HGGA:hierarchical guided genome assembler

Peer-reviewed
Open access
DOI
10.1186/s12859-022-04701-2
2022

Scalable Reference Genome Assembly from Compressed Pan-Genome Index with Spark

Peer-reviewed
Open access
DOI
10.1007/978-3-030-59612-5_6
2020

Optical map guided genome assembly

Peer-reviewed
Open access
DOI
10.1186/s12859-020-03623-1
2020

Measurement, modeling and optimization of bacterial bioprocesses

Peer-reviewed
2006